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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400054315 | ||||||||
Common Name | LOC102578532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 252aa MW: 27502 Da PI: 8.0841 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.1 | 1.5e-32 | 177 | 235 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ PGSC0003DMP400054315 177 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 235 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-34 | 162 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-28 | 169 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.608 | 172 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-38 | 177 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 178 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MERGSEERNQ LNNYNLQVSF SSSSSAAAPN HVHHELGFIH FADQNLSFLA PSSQSSQSLQ 60 AAAAAAAAAA SVSVTPSAAI NTNAAAAGAS NNVGGGGGGL GFSHNELLVN RPSWNNNEQV 120 ETLDPKGIND ENCSGNASEG NNSWWKSSSS DKGKVKIRRK LREPRFCFQT RSDIDVLDDG 180 YKWRKYGQKV VKNSLHPRSY YRCTHSNCRV KKRVERLSED CRMVITTYEG RHNHSPCDDS 240 NSSDHDCFTS F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 168 | 234 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 168 | 234 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | KIRRKLR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-85 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347986.1 | 0.0 | PREDICTED: probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-73 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | M1D2Y0 | 0.0 | M1D2Y0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400080069 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7336 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 8e-64 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400054315 |
Entrez Gene | 102578532 |
Publications ? help Back to Top | |||
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